ceirr-sab-2025

Near real-time data on the human neutralizing antibody landscape to influenza virus to inform vaccine-strain selection in September 2025

flu-seqneut-2025

Near real-time data on the human neutralizing antibody landscape to influenza virus to inform vaccine-strain selection in September 2025

chikv-e-host-dms

Pseudovirus deep mutational scanning of the CHIKV envelope proteins in different cell lines

asv-2025

Interpreting viral evolution

grc2025

Estimating effects of mutations to all SARS-CoV-2 proteins from actual versus expected mutation counts in natural sequences

microbe-2025

Interpreting viral evolution

virus-evol-general

Virus Evolution: From SARS-CoV-2 to Avian Influenza

fda-2025

Interpreting viral evolution

vaxco-2025

viral-evol-2025

Interpreting viral evolution

awaji-cov-vax

Viral evolution and COVID-19 vaccines

awaji-cov

Interpreting SARS-CoV-2 evolution

sars2evol

Interpreting SARS-CoV-2 evolution

seqneut-analysis

How to fit tens of thousands of neutralization curve (neutcurve and seqneut-pipeline)

nasem-h5

Presentation for Oct-22-2024 NASEM workshop on research priorities for H5N1

spikemuts_2024-10-16

Analysis of spike mutations in XEC and other currently important SARS-CoV-2 variants as of Oct-16-2024

embo-workshop

Interpreting evolution of SARS-CoV-2 and other viruses

hhmi-meeting-2024

From molecular phenotype to virus evolution: deep mutational scanning of the SARS-CoV-2 spike

h5-missouri-2024

HA mutations in human case of influenza from Missouri

scripps-circuits-to-systems-2024

From molecular phenotype to virus evolution: deep mutational scanning of the SARS-CoV-2 spike

lenti-dms-antibody-escape

Using lentiviral deep mutational scanning to map all escape mutations from antibodies

chicago2024

Using deep mutational scanning to understand virus evolution

h5-dms-short

Deep mutational scanning of H5 HA

lenti-dms

Interpreting the evolution of SARS-CoV-2

BA_2_87_1 sars2 variant

Analysis of the new BA.2.87 SARS-CoV-2 variant

sars2-evol

Interpreting the evolution of SARS-CoV-2

sars2-sinai

Interpreting the evolution of SARS-CoV-2

sars2dms

Pseudovirus deep mutational scanning to forecast SARS-CoV-2 evolution

sars2-general

Interpreting the evolution of SARS-CoV-2

ceirr-sab-2023

Pseudovirus deep mutational scanning to prospectively map antigenic and functional phenotypes of H5 hemagglutinin

unc2023

Interpreting the evolution of SARS-CoV-2

stanford2023

Interpreting the evolution of SARS-CoV-2

lanl-2023

Interpreting the evolution of SARS-CoV-2

SARS2-RBD-escape-calc

An antibody escape calculator for the SARS-CoV-2 receptor binding domain

new_2nd_gen_BA2_variant

Analysis of spike mutations in new second-generation BA.2 variant with many mutations

lentiviral-dms

Lentiviral deep mutational scanning

escape-calc-for-vax

Mapping escape mutations to inform vaccines

az-2023

Interpreting the evolution of SARS-CoV-2

grc-2023

Interpreting the evolution of SARS-CoV-2

future-sars2-escape-xbb

Possible future evolution of SARS-CoV-2 XBB variants

huanan-market-samples

Association between SARS-CoV-2 and metagenomic content of samples from the Huanan Seafood Market

polyclonal-mapping

Mapping viral escape from polyclonal serum

dms-for-vax

Interpreting the evolution of SARS-CoV-2

sars2-mut-fitness

Estimating effects of mutations to all SARS-CoV-2 proteins from actual versus expected mutation counts in natural sequences

id-rounds

Lentiviral pseudotype deep mutational scanning and estimating mutational effects

hhmi2022

Interpreting the evolution of SARS-CoV-2

sars2-variants

SARS-CoV-2 variants evolution

sars2-dms

Interpreting the evolution of SARS-CoV-2

sars2-hms

Interpreting the evolution of SARS-CoV-2

viral-dms-short

Viral deep mutational scanning (short version)